Choose Print from the file menu. The view is printed without the options panel. It is recommended to turn on Wrap sequence and deselect Colors before printing. Wrapping prints the sequence as seen in the sequence viewer and the font size is chosen to fill the horizontal width of the page. The following options are available:
Portrait or landscape. Controls the orientation of the page.
Scale. Can be used to decrease or increase the size of everything in the view, while still printing within the same region of the page. For many types of document views, this will cause it to wrap to the following line earlier, usually requiring more pages.
Size. Controls the size the printed region on the paper. Effectively, increasing the size, reduces the margins on the page.