Serialized Form (Geneious Public API)

Package com.biomatters.geneious.publicapi.components
- Class com.biomatters.geneious.publicapi.components.DialogButtonPanel extends GPanel implements Serializable
  - Serialized Fields
    - okButton
```
GButton okButton
```
    - cancelButton
```
GButton cancelButton
```
    - allButtons
```
List<E> allButtons
```
- Class com.biomatters.geneious.publicapi.components.GButton extends JButton implements Serializable
  - Serialized Fields
    - originalFont
```
Font originalFont
```
- Class com.biomatters.geneious.publicapi.components.GComboBox extends JComboBox implements Serializable
  - Serialized Fields
    - numItems
```
int numItems
```
    - itemHeights
```
HashMap<K,V> itemHeights
```
    - originalFont
```
Font originalFont
```
    - popup
```
BasicComboPopup popup
```
    - list
```
JList<E> list
```
    - largestCell
```
int largestCell
```
    - totalHeight
```
double totalHeight
```
    - heightCounter
```
int heightCounter
```
- Class com.biomatters.geneious.publicapi.components.GDialog extends JDialog implements Serializable
  - Serialized Fields
    - maxDimensions
```
Dimension maxDimensions
```
- Class com.biomatters.geneious.publicapi.components.GEditorPane extends JEditorPane implements Serializable
- Class com.biomatters.geneious.publicapi.components.GeneiousActionToolbar extends GPanel implements Serializable
  - Serialized Fields
    - preferencesAbsolutePath
```
String preferencesAbsolutePath
```
    - popupActions
```
List<E> popupActions
```
      Actions that can't fit in the toolbar so they have been put under a popup menu
    - toolBarComponents
```
List<E> toolBarComponents
```
      Components in the main toolbar (as apposed to the popup) in the order they are in the toolbar
    - rightToolBarComponents
```
List<E> rightToolBarComponents
```
    - popupComponents
```
List<E> popupComponents
```
      Components that can't fit in the toolbar so they have been put under a popup menu
    - allComponents
```
Map<K,V> allComponents
```
    - originalActions
```
Map<K,V> originalActions
```
    - toolBarActions
```
List<E> toolBarActions
```
      Actions in toolbar (as apposed to the popup) in the order they are in the toolbar
    - rightToolBarActions
```
List<E> rightToolBarActions
```
    - hiddenActions
```
List<E> hiddenActions
```
      Actions that have been hidden by the user unchecking it in the popup.
    - defaultLarge
```
boolean defaultLarge
```
    - defaultLabels
```
boolean defaultLabels
```
    - displayLargeLabelsHorizontal
```
boolean displayLargeLabelsHorizontal
```
    - autoHideLabels
```
boolean autoHideLabels
```
    - popupButton
```
AbstractButton popupButton
```
    - popupAction
```
GeneiousAction.SubMenu popupAction
```
    - mainToolBar
```
JToolBar mainToolBar
```
    - rightToolBar
```
JToolBar rightToolBar
```
    - buttonFocusListener
```
ActionListener buttonFocusListener
```
    - focusComponent
```
JComponent focusComponent
```
    - popupEnabled
```
boolean popupEnabled
```
    - iconSizeEnabled
```
boolean iconSizeEnabled
```
    - overridePosition
```
boolean overridePosition
```
    - popupToolBar
```
JToolBar popupToolBar
```
    - widthListener
```
ComponentAdapter widthListener
```
    - showLabelsItem
```
JCheckBoxMenuItem showLabelsItem
```
    - iconSizeItem
```
JCheckBoxMenuItem iconSizeItem
```
    - popupMouseListener
```
MouseListener popupMouseListener
```
- Class com.biomatters.geneious.publicapi.components.GLabel extends JLabel implements Serializable
  - Serialized Fields
    - originalFont
```
Font originalFont
```
- Class com.biomatters.geneious.publicapi.components.GPanel extends JPanel implements Serializable
- Class com.biomatters.geneious.publicapi.components.GPopupMenu extends JPopupMenu implements Serializable
  - Serialized Fields
    - menuChangeListeners
```
Map<K,V> menuChangeListeners
```
    - parentFrame
```
JFrame parentFrame
```
    - windowListener
```
WindowAdapter windowListener
```
- Class com.biomatters.geneious.publicapi.components.GSpinnerNumberModel extends SpinnerNumberModel implements Serializable
- Class com.biomatters.geneious.publicapi.components.GTable extends JTable implements Serializable
- Class com.biomatters.geneious.publicapi.components.GTextArea extends JTextArea implements Serializable
- Class com.biomatters.geneious.publicapi.components.GTextField extends JTextField implements Serializable
- Class com.biomatters.geneious.publicapi.components.GTextPane extends JTextPane implements Serializable
- Class com.biomatters.geneious.publicapi.components.GTextPane.MemoryFixedHTMLEditorKit extends HTMLEditorKit implements Serializable
- Class com.biomatters.geneious.publicapi.components.MoreOptionsButton extends GButton implements Serializable
  - Serialized Fields
    - moreText
```
String moreText
```
    - lessText
```
String lessText
```
    - isMore
```
boolean isMore
```
    - changeListeners
```
SimpleListenerManager changeListeners
```
- Class com.biomatters.geneious.publicapi.components.OptionsPanel extends JPanel implements Serializable
  - Serialized Fields
    - constraints
```
GridBagConstraints constraints
```
    - verticalSpacingAbove
```
int verticalSpacingAbove
```
    - verticalSpacingBelow
```
int verticalSpacingBelow
```
    - panel
```
JPanel panel
```
    - rightSpacingWeight
```
double rightSpacingWeight
```
    - labelAnchor
```
int labelAnchor
```
    - componentAnchor
```
int componentAnchor
```
    - subPanel
```
OptionsPanel subPanel
```
    - horizontallyCompact
```
boolean horizontallyCompact
```
    - defaultWeightY
```
double defaultWeightY
```
- Class com.biomatters.geneious.publicapi.components.ProOnlyComponents.Button extends GButton implements Serializable
  - Serialized Fields
    - enabled
```
boolean enabled
```
    - proMode
```
boolean proMode
```
- Class com.biomatters.geneious.publicapi.components.ProOnlyComponents.CheckBox extends JCheckBox implements Serializable
  - Serialized Fields
    - enabled
```
boolean enabled
```
    - showProOnlyText
```
ProOnlyComponents.CheckBox.ProOnlySuffix showProOnlyText
```
    - name
```
String name
```
- Class com.biomatters.geneious.publicapi.components.ProOnlyComponents.CheckBoxMenuItem extends JCheckBoxMenuItem implements Serializable
  - Serialized Fields
    - enabled
```
boolean enabled
```
- Class com.biomatters.geneious.publicapi.components.ProOnlyComponents.ComboBox extends GComboBox implements Serializable
  - Serialized Fields
    - enabled
```
boolean enabled
```
- Class com.biomatters.geneious.publicapi.components.ProOnlyComponents.Label extends JLabel implements Serializable
  - Serialized Fields
    - enabled
```
boolean enabled
```
    - showProOnlyText
```
boolean showProOnlyText
```
    - name
```
String name
```
- Class com.biomatters.geneious.publicapi.components.ProOnlyComponents.Menu extends JMenu implements Serializable
  - Serialized Fields
    - enabled
```
boolean enabled
```
- Class com.biomatters.geneious.publicapi.components.ProOnlyComponents.MenuItem extends JMenuItem implements Serializable
  - Serialized Fields
    - enabled
```
boolean enabled
```
- Class com.biomatters.geneious.publicapi.components.ProOnlyComponents.Panel extends JPanel implements Serializable
  - Serialized Fields
    - component
```
JComponent component
```
    - proOnlyLabel
```
JLabel proOnlyLabel
```
- Class com.biomatters.geneious.publicapi.components.ProOnlyComponents.ToggleButton extends JToggleButton implements Serializable
  - Serialized Fields
    - enabled
```
boolean enabled
```
    - proMode
```
boolean proMode
```
- Class com.biomatters.geneious.publicapi.components.ZoomPanel extends JPanel implements Serializable
  - Serialized Fields
    - zoomSpinnerModel
```
SpinnerNumberModel zoomSpinnerModel
```
    - zoomFactor
```
double zoomFactor
```
    - bigZoomFactor
```
double bigZoomFactor
```
    - fitToScreenZoomLevel
```
double fitToScreenZoomLevel
```
    - minZoomLevel
```
double minZoomLevel
```
    - maxZoomLevel
```
double maxZoomLevel
```
    - zoomLevel
```
double zoomLevel
```
    - settingSpinner
```
boolean settingSpinner
```
    - zoomIn
```
JButton zoomIn
```
    - zoomOut
```
JButton zoomOut
```
    - zoomToSelection
```
JButton zoomToSelection
```
    - zoomTo100Percent
```
JButton zoomTo100Percent
```
    - fitToScreen
```
JButton fitToScreen
```
    - listeners
```
Vector<E> listeners
```
    - slider
```
JSlider slider
```
    - targetZoomLevel
```
double targetZoomLevel
```
Package com.biomatters.geneious.publicapi.databaseservice
- Class com.biomatters.geneious.publicapi.databaseservice.DatabaseServiceException extends Exception implements Serializable
  - Serialized Fields
    - userMessage
```
String userMessage
```
    - isNetworkConnectionError
```
boolean isNetworkConnectionError
```
Package com.biomatters.geneious.publicapi.documents
- Class com.biomatters.geneious.publicapi.documents.MalformedURNException extends Exception implements Serializable
- Class com.biomatters.geneious.publicapi.documents.XMLSerializationException extends Exception implements Serializable
Package com.biomatters.geneious.publicapi.implementations
- Class com.biomatters.geneious.publicapi.implementations.EValue extends Number implements Serializable
  - Serialized Fields
    - value
```
Double value
```
    - decimalPlacesDisplayed
```
Integer decimalPlacesDisplayed
```
- Class com.biomatters.geneious.publicapi.implementations.Percentage extends Number implements Serializable
  - Serialized Fields
    - value
```
Double value
```
    - decimalPlacesDisplayed
```
Integer decimalPlacesDisplayed
```
Package com.biomatters.geneious.publicapi.plugin
- Class com.biomatters.geneious.publicapi.plugin.DocumentImportException extends Exception implements Serializable
- Class com.biomatters.geneious.publicapi.plugin.DocumentImportException.Canceled extends DocumentImportException implements Serializable
- Class com.biomatters.geneious.publicapi.plugin.DocumentOperationException extends Exception implements Serializable
- Class com.biomatters.geneious.publicapi.plugin.DocumentOperationException.Canceled extends DocumentOperationException implements Serializable
- Class com.biomatters.geneious.publicapi.plugin.GeneiousAction extends AbstractAction implements Serializable
  - Serialized Fields
    - actionOptions
```
GeneiousActionOptions actionOptions
```
    - internalAction
```
GeneiousAction internalAction
```
    - buttonPropertyListeners
```
List<E> buttonPropertyListeners
```
    - freeUpMemoryNow
```
Runnable freeUpMemoryNow
```
- Class com.biomatters.geneious.publicapi.plugin.GeneiousAction.Divider extends GeneiousAction implements Serializable
- Class com.biomatters.geneious.publicapi.plugin.GeneiousAction.SubMenu extends GeneiousAction implements Serializable
  - Serialized Fields
    - subActions
```
List<E> subActions
```
    - popupIcons
```
Icons popupIcons
```
    - lastPopupCanceled
```
long lastPopupCanceled
```
    - actionsChangedListeners
```
SimpleListenerManager actionsChangedListeners
```
- Class com.biomatters.geneious.publicapi.plugin.GeneiousAction.ToggleAction extends GeneiousAction implements Serializable
  - Serialized Fields
    - isSelected
```
boolean isSelected
```
- Class com.biomatters.geneious.publicapi.plugin.RuntimeDocumentOperationException extends RuntimeException implements Serializable
- Class com.biomatters.geneious.publicapi.plugin.SequenceSelection.SequenceIndex.SelectionWrongForDocumentsException extends SequenceSelectionWithDocuments.SelectedDocumentsModifiedException implements Serializable
  - Serialized Fields
    - documents
```
List<E> documents
```
      Deprecated.
- Class com.biomatters.geneious.publicapi.plugin.SequenceSelectionWithDocuments.DocumentsInvalidException extends DocumentOperationException implements Serializable
- Class com.biomatters.geneious.publicapi.plugin.SequenceSelectionWithDocuments.SelectedDocumentsModifiedException extends IllegalStateException implements Serializable
Package com.biomatters.geneious.publicapi.utilities
- Class com.biomatters.geneious.publicapi.utilities.ProgressInputStream.ProgressInterruptedIOException extends InterruptedIOException implements Serializable

Serialized Form

Package com.biomatters.geneious.publicapi.components

Class com.biomatters.geneious.publicapi.components.DialogButtonPanel extends GPanel implements Serializable

Serialized Fields

okButton

cancelButton

allButtons

Class com.biomatters.geneious.publicapi.components.GButton extends JButton implements Serializable

Serialized Fields

originalFont

Class com.biomatters.geneious.publicapi.components.GComboBox extends JComboBox implements Serializable

Serialized Fields

numItems

itemHeights

originalFont

popup

list

largestCell

totalHeight

heightCounter

Class com.biomatters.geneious.publicapi.components.GDialog extends JDialog implements Serializable

Serialized Fields

maxDimensions

Class com.biomatters.geneious.publicapi.components.GEditorPane extends JEditorPane implements Serializable

Class com.biomatters.geneious.publicapi.components.GeneiousActionToolbar extends GPanel implements Serializable

Serialized Fields

preferencesAbsolutePath

popupActions

toolBarComponents

rightToolBarComponents

popupComponents

allComponents

originalActions

toolBarActions

rightToolBarActions

hiddenActions

defaultLarge

defaultLabels

displayLargeLabelsHorizontal

autoHideLabels

popupButton

popupAction

mainToolBar

rightToolBar

buttonFocusListener

focusComponent

popupEnabled

iconSizeEnabled

overridePosition

popupToolBar

widthListener

showLabelsItem

iconSizeItem

popupMouseListener

Class com.biomatters.geneious.publicapi.components.GLabel extends JLabel implements Serializable

Serialized Fields

originalFont

Class com.biomatters.geneious.publicapi.components.GPanel extends JPanel implements Serializable

Class com.biomatters.geneious.publicapi.components.GPopupMenu extends JPopupMenu implements Serializable

Serialized Fields

menuChangeListeners

parentFrame

windowListener

Class com.biomatters.geneious.publicapi.components.GSpinnerNumberModel extends SpinnerNumberModel implements Serializable

Class com.biomatters.geneious.publicapi.components.GTable extends JTable implements Serializable

Class com.biomatters.geneious.publicapi.components.GTextArea extends JTextArea implements Serializable

Class com.biomatters.geneious.publicapi.components.GTextField extends JTextField implements Serializable

Class com.biomatters.geneious.publicapi.components.GTextPane extends JTextPane implements Serializable

Class com.biomatters.geneious.publicapi.components.GTextPane.MemoryFixedHTMLEditorKit extends HTMLEditorKit implements Serializable

Class com.biomatters.geneious.publicapi.components.MoreOptionsButton extends GButton implements Serializable

Serialized Fields

moreText

lessText

isMore

changeListeners

Class com.biomatters.geneious.publicapi.components.OptionsPanel extends JPanel implements Serializable

Serialized Fields

constraints

verticalSpacingAbove

verticalSpacingBelow