Chapter 9
Sequence Alignments

  9.1 Dotplots
  9.2 Sequence Alignments
   9.2.1 Pairwise sequence alignments
   9.2.2 Multiple sequence alignments
   9.2.3 Sequence alignment using Clustal Omega
   9.2.4 Sequence alignment using MUSCLE
   9.2.5 Other sequence alignment plugins for Geneious Prime
   9.2.6 Translation alignment
   9.2.7 Combining alignments and adding sequences to alignments
  9.3 Alignment viewing and editing
   9.3.1 Highlighting
   9.3.2 Alignment viewer graphs
  9.4 Alignment masking
  9.5 Consensus sequences