12.4.2 Creating a consensus tree of existing trees

Select a tree set document (e.g. a set of bootstrap replicate trees) and choose Tree then Consensus Tree Builder at the top of the setup dialog. Check Create Consensus Tree and choose the Support Threshold % you wish to use. This will create a consensus tree using the trees already in the document (no resampling will be performed) and it will either be added to the tree document or saved as a separate tree document.