12.3.5 Advanced Tree Building methods

Other plugins are available for running maximum likelihood or Bayesian phylogenetic analyses in Geneious, including MrBayes, PhyML, GARLI, RAxML, FastTree, and PAUP*. These can be downloaded from the plugins page on our website or within Geneious by going to Plugins under the Tools menu. For more information on running these programs, please consult the user manual for the source software.