Chapter 9
Sequence Alignments

  9.1 Dotplots
  9.2 Sequence Alignments
   9.2.1 Pairwise sequence alignments
   9.2.2 Multiple sequence alignments
   9.2.3 Sequence alignment using ClustalW
   9.2.4 Sequence alignment using MUSCLE
   9.2.5 Other sequence alignment plugins for Geneious Prime
   9.2.6 Translation alignment
   9.2.7 Combining alignments and adding sequences to alignments
  9.3 Alignment viewing and editing
   9.3.1 Highlighting
   9.3.2 Alignment graphs
   9.3.3 Concatenating alignments
  9.4 Alignment masking
  9.5 Consensus sequences