Uses of Class
com.biomatters.geneious.publicapi.plugin.DocumentOperationInput

Packages that use DocumentOperationInput

Package	Description
com.biomatters.geneious.publicapi.plugin	Provides the GeneiousPlugin interface and plugin related interfaces.

Uses of DocumentOperationInput in com.biomatters.geneious.publicapi.plugin

Methods in com.biomatters.geneious.publicapi.plugin that return DocumentOperationInput

Modifier and Type	Method	Description
DocumentOperationInput	DocumentOperationInput.setLocationOptions(OperationLocationOptions locationOptions)	Sets the location options to be used for this operation.
DocumentOperationInput	DocumentOperationInput.setResultsLocation(WritableDatabaseService resultsLocation)	Sets the results location to be used for this operation.
DocumentOperationInput	DocumentOperationInput.setSequenceSelection(SequenceSelection sequenceSelection)	Sets the sequence selection to be used for this operation.

Methods in com.biomatters.geneious.publicapi.plugin with parameters of type DocumentOperationInput

Modifier and Type	Method	Description
Options	DocumentOperation.getOptions(DocumentOperationInput operationInput)	More powerful alternative to DocumentOperation.getOptions(AnnotatedPluginDocument[]) which may provide additional values such as the location the operation is run and the currently selected region of any sequence in the documents.
Options	DocumentOperation.Wrapper.getOptions(DocumentOperationInput operationInput)
final Options	GeneiousGridDocumentOperation.getOptions(DocumentOperationInput operationInput)	Returns options for running the full grid operation (an almagimation of the options given by GeneiousGridDocumentOperation.getProgramOptions(com.biomatters.geneious.publicapi.documents.AnnotatedPluginDocument[]), and some extra options describing where the job will run.