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Package Summary
Package
Description
Provides useful GUI (graphical user interface) components, none of which
are necessary for creating a plugin, but many plugin implentations
will find these components useful.
Provides the interface and associated classes for
defining a database service which is a service that
appears on the left-hand side of the main Geneious window
and provides the user with access to a database, for example
NCBI or the local database for storing the user's documents.
Provides interfaces and classes for defining documents in Geneious and related
interfaces and classes for dealing with XMLSerialization.
Provides interfaces specifying the types of
sequence and
alignment
documents in Geneious, together with concrete classes used by sequence documents
such as SequenceAnnotation
and SequenceCharSequence.Provides interfaces specifying the types of documents available in Geneious.
Provides implementations for many of the document interfaces defined
in the package com.biomatters.geneious.publicapi.documents.types
together with some utility classes for dealing with some of these
document types.
Provides
SequenceDocument
implementations for nucelotide, amino acid, and nucleotide graph (chromatogram) sequences.Provides
MolecularStructureDocument
implementations for many commonly used 3D structure documents.Provides the
GeneiousPlugin interface and plugin
related interfaces.Provides various utility methods and classes, none of which
are necessary for creating a plugin, but many plugins implentations
will find these methods useful.