All Classes
AbstractPluginDocument
ActionProvider
AdditionalSearchContent
AdditionalSearchContent.Result
AdditionalSearchContent.Utilities
AdditionalSearchContent.Utilities.Filter
AdditionalSearchContent.Utilities.FilterElement
AdvancedSearchQueryTerm
AliasDocument
AlignmentLayout
AlignmentOperation
AlignmentOperation.InputProperties
AminoAcidSequenceDocument
AnnotatedPluginDocument
AnnotatedPluginDocument.ActiveLinkSaveBehaviour
AnnotatedPluginDocument.DocumentNotes
Assembler
Assembler.Callback
Assembler.ContigOutputSupport
Assembler.ReferenceSequenceSupport
AssemblerInput
AssemblerInput.DataType
AssemblerInput.PairedDataType
AssemblerInput.Properties
AssemblerInput.Read
AssemblerInput.ReferenceSequence
Author
Base64Coder
BasicSearchQuery
BorderlessScrollPane
BubbleToolTip
ByteBackedCharSequence
CallSoon
CallSoon.EnabledProvider
CharSequenceUtilities
CheckboxSearchOption
ChromatogramDocument
CmlDocument
CodonUsageTableDocument
CombinedAlignmentAndAminoAcidSequenceDocument
CombinedAlignmentAndNucleotideGraphSequenceDocument
CombinedAlignmentAndNucleotideSequenceDocument
CombinedAlignmentAndSequenceDocument
ComboboxSearchOption
CompactQualityOnlyGraph
CompositeRetrieveCallback
CompoundSearchQuery
CompoundSearchQuery.Operator
CompressionUtilities
CompressionUtilities.CompressedFileWrapper
CompressionUtilities.CompressionMethod
ConcatenatedList
Condition
Constraint
ConstructorWrapper
DatabaseFolderImporter
DatabaseService
DatabaseService.SequenceSearchQueryType
DatabaseServiceException
DatabaseServiceListener
DataInputOutputUtilities
DefaultAlignmentDocument
DefaultAminoAcidSequence
DefaultHyperlinkListener
DefaultHyperlinkListener.SerializableRunnable
DefaultMolecularStructureDocument
DefaultNucleotideGraph
DefaultNucleotideGraphSequence
DefaultNucleotideSequence
DefaultPhylogenyDocument
DefaultSameTaxaTreesDocument
DefaultSequenceDocument
DefaultSequenceDocument.Cache
DefaultSequenceGraphFactories
DefaultSequenceGraphFactories.SequenceAlignmentScorer
DefaultSequenceGraphFactories.SingleSequenceScorer
DefaultSequenceListDocument
DefaultTreeDocument
DependentComboboxSearchOption
DialogButtonPanel
Dialogs
Dialogs.DialogAction
Dialogs.DialogClosedListener
Dialogs.DialogIcon
Dialogs.DialogOptions
Dialogs.Result
Dialogs.SaveChanges
DocumentAction
DocumentCollection
DocumentField
DocumentField.SequenceType
DocumentFieldAndValue
DocumentFileExporter
DocumentFileExporterAndExternalViewer
DocumentFileImporter
DocumentFileImporter.AutoDetectStatus
DocumentFileImporter.ImportCallback
DocumentFilter
DocumentHistory
DocumentHistoryEntry
DocumentHistoryEntryField
DocumentImportException
DocumentImportException.Canceled
DocumentListener
DocumentNote
DocumentNoteField
DocumentNoteField.Types
DocumentNoteType
DocumentNoteUtilities
DocumentOperation
DocumentOperation.OperationCallback
DocumentOperation.OperationCallback.Wrapper
DocumentOperation.Wrapper
DocumentOperationException
DocumentOperationException.Canceled
DocumentOperationInput
DocumentSearchCache
DocumentSelectionOption
DocumentSelectionOption.DoNotRememberInPreferences
DocumentSelectionOption.FolderOrDocuments
DocumentSelectionOption.OptionValueCreator
DocumentSelectionSignature
DocumentSelectionSignature.DocumentSelectionSignatureAtom
DocumentType
DocumentUtilities
DocumentViewer
DocumentViewer.ViewerLocation
DocumentViewerFactory
DocumentViewerFactory.ViewPrecedence
DocumentViewerMessageHandler
EditableNucleotideGraphSequenceDocument
EditableSameTaxaTreesDocument
EditableSequenceDocument
EditableSequenceListDocument
ElementProvider
EndGapsHelper
EndGapsManager
EndGapsManager.Builder
EValue
Execution
Execution.OutputListener
ExportableDocument
ExportableDocument.Format
ExtendedEditableSequenceListDocument
ExtendedNucleotideGraph
ExtendedPrintable
ExtendedPrintable.Factory
ExtendedPrintable.Wrapper
ExtendedSearchOption
ExternalSort
ExternalSort.Serializer
FastSaxBuilder
FieldWithName
FileUtilities
FileUtilities.RetryPolicy
FileUtilities.TargetExistsAction
FilteredSaxHandler
FilteredSaxHandler.ElementHandler
Findable
Findable.FindAllCallback
Findable.FindOptions
Findable.FindResult
FolderView
FolderViewDocument
GarbageCollectionNotifier
GButton
GCheckBox
GComboBox
GComboBox.AlternativeDropDownTextProvider
GComboBox.DefaultModelWhereSetSelectedItemDoesntFireContentsChanged
GComboBox.DescriptionProvider
GComboBox.EnabledStateProvider
GComboBox.IconsProvider
GDefaultTreeCellRenderer
GDialog
GEditorPane
Geneious
Geneious.MajorVersion
GeneiousAction
GeneiousAction.Divider
GeneiousAction.SubMenu
GeneiousAction.ToggleAction
GeneiousActionOptions
GeneiousActionOptions.Category
GeneiousActionOptions.MainMenu
GeneiousActionOptions.ShortcutChangeListener
GeneiousActionToolbar
GeneiousActionToolbar.CustomToolbarComponent
GeneiousGraphics2D
GeneiousGridDocumentOperation
GeneiousGridDocumentOperation.GridInput
GeneiousGridDocumentOperation.LocationChangedListenerProvider
GeneiousGridImporter
GeneiousObjectInputStream
GeneiousObjectOutputStream
GeneiousPlugin
GeneiousPreferences
GeneiousPreferences.GeneiousCheckBoxPreference
GeneiousPreferences.GeneiousComboBoxPreference
GeneiousPreferences.GeneiousDependentPreference
GeneiousPreferences.GeneiousPreference
GeneiousPreferences.GeneiousRadioButtonPreference
GeneiousPreferences.GeneiousStringPreference
GeneiousService
GeneiousService.ServiceStatus
GeneiousServiceListener
GeneiousServiceWithPanel
GeneralUtilities
GLabel
GMenuItem
GPanel
GPopupMenu
GprDocument
GSpinnerNumberModel
GTable
GTextArea
GTextField
GTextPane
GuiUtilities
HinDocument
Icons
IconUtilities
ImmutableSequence
ImmutableSequence.Builder
ImmutableSequenceImplementation
ImportUtilities
ImportUtilities.ActionWhenInvalid
ImportUtilities.ImportDocumentType
InputStreamFromRandomAccessFile
Intern
Interval
IntList
IntList.Array
JournalArticleDocument
JournalArticleDocument.Utils
License
License.PluginLicense
MalformedURNException
MayReturnSlowly
MolDocument
MolecularStructureDocument
MoreOptionsButton
MultiThreadedProcessingSystem
MultiThreadedTask
MustReturnPromptly
NoLongerViewedListener
NucleotideCounter
NucleotideGraph
NucleotideGraph.ImmutableGraphProvider
NucleotideGraphSequenceDocument
NucleotideSequenceDocument
NwoDocument
OligoSequenceDocument
OligoSequenceDocument.OligoType
OperationLocationOptions
OperationLocationOptions.LocationChangedListener
OperationRecordDocument
Options
Options.Alignment
Options.BooleanOption
Options.ButtonOption
Options.ComboBoxOption
Options.ComponentCreator
Options.DateOption
Options.DoubleOption
Options.EditableComboBoxOption
Options.ExecutableFileSelectionOption
Options.FileSelectionOption
Options.IntegerOption
Options.LabelOption
Options.MultipleLineStringOption
Options.MultipleOptions
Options.Option
Options.OptionValue
Options.PageChooserType
Options.RadioOption
Options.RadioOption.DependentPosition
Options.StringOption
OptionsPanel
OptionsPanel.RoundedLineBorder
OutputStreamThatCountsBytesWritten
OutputStreamToRandomAccessFile
OverlayIcons
PairedReadManager
PairedReadManager.Builder
PairedReadManager.Orientation
PairedReads
PartiallyWritableDatabaseService
PasswordOption
PdbDocument
Percentage
PhylogenyDocument
PluginDocument
PluginDocument.ReferencedDocumentsAlwaysLoaded
PluginDocument.ReferencedDocumentsNotLoaded
PluginDocument.SizeRequiredToLoadIntoMemoryProvider
PluginDocumentXmlCollection
PluginDocumentXmlCollection.ElementHandler
PluginPreferences
PluginUtilities
PluginUtilities.WritableDatabaseServicesListener
ProgressFrame
ProgressInputStream
ProgressInputStream.ProgressInterruptedIOException
ProOnlyComponents
ProOnlyComponents.Button
ProOnlyComponents.CheckBox
ProOnlyComponents.CheckBox.ProOnlySuffix
ProOnlyComponents.CheckBoxMenuItem
ProOnlyComponents.ComboBox
ProOnlyComponents.Label
ProOnlyComponents.Menu
ProOnlyComponents.MenuItem
ProOnlyComponents.Panel
ProOnlyComponents.ToggleButton
PublicationDocument
PublicationDocument.Utils
Query
Query.Factory
QueryField
Renamable
RetrieveCallback
RootedTreeDocument
RunnableWithProgress
RuntimeDocumentOperationException
SameTaxaTreesDocument
SearchIndexCorruptOrMissingException
SequenceAlignmentDocument
SequenceAlignmentDocument.ReferencedSequence
SequenceAlignmentListDocument
SequenceAnnotation
SequenceAnnotationGenerator
SequenceAnnotationGenerator.AnnotationGeneratorResult
SequenceAnnotationGenerator.AnnotationGeneratorResult.ResidueAdjustment
SequenceAnnotationGenerator.AnnotationGeneratorResultOnAlignment
SequenceAnnotationGenerator.AnnotationGeneratorResultsOnSingleSequence
SequenceAnnotationGenerator.SelectionGrabOption
SequenceAnnotationGenerator.SelectionRange
SequenceAnnotationGenerator.SingleSequenceResultGenerator
SequenceAnnotationGroup
SequenceAnnotationInterval
SequenceAnnotationInterval.Direction
SequenceAnnotationQualifier
SequenceBuilder
SequenceCharSequence
SequenceDatabaseSuperService
SequenceDocument
SequenceDocument.Alphabet
SequenceDocument.Transformer
SequenceDocumentWithEditableAnnotations
SequenceExtractionUtilities
SequenceExtractionUtilities.ExtractionOptions
SequenceGapInformation
SequenceGapInformation.Provider
SequenceGraph
SequenceGraph.Location
SequenceGraph.SequencePropertyRetriever
SequenceGraphFactory
SequenceListDocument
SequenceListOnDisk
SequenceListOnDisk.AlignmentData
SequenceListOnDisk.Builder
SequenceListSummary
SequenceListSummary.Coverage
SequenceListSummary.PairwiseSimilarity
SequenceListSummary.Provider
SequencePropertiesStorage
SequenceSelection
SequenceSelection.SelectedAnnotation
SequenceSelection.SelectionInterval
SequenceSelection.SequenceDocumentType
SequenceSelection.SequenceIndex
SequenceSelectionWithDocuments
SequenceSelectionWithDocuments.DocumentsInvalidException
SequenceSelectionWithDocuments.ExtractionStrategy
SequenceSelectionWithDocuments.SelectedDocumentsModifiedException
SequenceTrack
SequenceTrack.Manager
SequenceTrack.Manager.Provider
SequenceUtilities
SequenceViewerExtension
SequenceViewerExtension.ComponentLocation
SequenceViewerExtension.Factory
SequenceViewerExtension.PropertyRetrieverAndEditor
SequenceViewerExtension.PropertyRetrieverAndEditor.DiscardReferencesCallback
SequenceViewerExtension.SequenceAnnotationWrapper
SequenceViewerExtension.StateFrequencies
SequenceViewerExtension.StatisticsFactory
SequenceViewerExtension.StatisticsSection
ServiceUtilities
StandardIcons
StringUtilities
SummaryDocument
SystemUtilities
SystemUtilities.LowMemoryChecker
TaxonomyDocument
TaxonomyDocument.Taxon
TaxonomyDocument.TaxonomicLevel
TestGeneious
TextDocument
TextDocument.Format
TextFieldSearchOption
TextOrSimilaritySearchOption
ThreadUtilities
TreeDocument
TreeViewerExtension
TreeViewerExtension.Factory
UI
UI.ClientProperties
UI.General
UI.Misc
UI.Symbols
UI.TabPane
UI.Tree
URLStreamHandlerManager
URN
UrnWithRevisionNumber
UserEditablePreferences
ValueAndFrequencyDistribution
ValueAndFrequencyDistribution.ValueAndFrequency
WeakReferenceList
WeakSimpleListenerManager
WritableDatabaseService
WritableDatabaseService.DummyService
WritableDatabaseService.SearchResultPropertiesAdjuster
WritableDatabaseServiceTree
XMLSerializable
XMLSerializable.OldVersionCompatible
XMLSerializable.VersionSupportType
XMLSerializableWithProgress
XMLSerializationException
XMLSerializer
XyzDocument
ZoomChangeEvent
ZoomPanel