Hierarchy For Package com.biomatters.geneious.publicapi.implementations

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • com.biomatters.geneious.publicapi.implementations.CodonUsageTableDocument (implements com.biomatters.geneious.publicapi.documents.PluginDocument, com.biomatters.geneious.publicapi.documents.XMLSerializable, com.biomatters.geneious.publicapi.documents.XMLSerializable.OldVersionCompatible)
  • com.biomatters.geneious.publicapi.implementations.DefaultSameTaxaTreesDocument (implements com.biomatters.geneious.publicapi.documents.types.EditableSameTaxaTreesDocument, com.biomatters.geneious.publicapi.documents.ExportableDocument, com.biomatters.geneious.publicapi.documents.XMLSerializable.OldVersionCompatible)
  • com.biomatters.geneious.publicapi.implementations.DefaultSequenceGraphFactories
  • com.biomatters.geneious.publicapi.implementations.DefaultSequenceGraphFactories.SequenceAlignmentScorer
  • com.biomatters.geneious.publicapi.implementations.DefaultSequenceGraphFactories.SingleSequenceScorer
  • com.biomatters.geneious.publicapi.implementations.DefaultTreeDocument (implements com.biomatters.geneious.publicapi.documents.types.EditableSameTaxaTreesDocument, com.biomatters.geneious.publicapi.documents.ExportableDocument, com.biomatters.geneious.publicapi.documents.types.RootedTreeDocument, com.biomatters.geneious.publicapi.documents.XMLSerializable.OldVersionCompatible)
  • com.biomatters.geneious.publicapi.implementations.EndGapsHelper
  • com.biomatters.geneious.publicapi.implementations.EndGapsManager
  • com.biomatters.geneious.publicapi.implementations.EndGapsManager.Builder
  • java.lang.Number (implements java.io.Serializable)
    • com.biomatters.geneious.publicapi.implementations.EValue (implements java.lang.Comparable<T>, com.biomatters.geneious.publicapi.documents.XMLSerializable, com.biomatters.geneious.publicapi.documents.XMLSerializable.OldVersionCompatible)
    • com.biomatters.geneious.publicapi.implementations.Percentage (implements java.lang.Comparable<T>, com.biomatters.geneious.publicapi.documents.XMLSerializable, com.biomatters.geneious.publicapi.documents.XMLSerializable.OldVersionCompatible)
  • com.biomatters.geneious.publicapi.implementations.PairedReadManager (implements com.biomatters.geneious.publicapi.documents.sequence.PairedReads, com.biomatters.geneious.publicapi.documents.XMLSerializable.OldVersionCompatible)
  • com.biomatters.geneious.publicapi.implementations.PairedReadManager.Builder
  • com.biomatters.geneious.publicapi.documents.sequence.SequenceAlignmentDocument (implements com.biomatters.geneious.publicapi.documents.sequence.PairedReads, com.biomatters.geneious.publicapi.documents.PluginDocument)
    • com.biomatters.geneious.publicapi.implementations.DefaultAlignmentDocument (implements com.biomatters.geneious.publicapi.documents.PluginDocument, com.biomatters.geneious.publicapi.documents.PluginDocument.SizeRequiredToLoadIntoMemoryProvider, com.biomatters.geneious.publicapi.documents.Renamable, com.biomatters.geneious.publicapi.documents.sequence.SequenceListSummary.Provider, com.biomatters.geneious.publicapi.implementations.sequence.SequenceTrack.Manager.Provider, com.biomatters.geneious.publicapi.documents.XMLSerializable.OldVersionCompatible, com.biomatters.geneious.publicapi.documents.XMLSerializableWithProgress)
      • com.biomatters.geneious.publicapi.documents.types.PhylogenyDocument (implements com.biomatters.geneious.publicapi.documents.types.SameTaxaTreesDocument)
        • com.biomatters.geneious.publicapi.implementations.DefaultPhylogenyDocument (implements com.biomatters.geneious.publicapi.documents.types.EditableSameTaxaTreesDocument, com.biomatters.geneious.publicapi.documents.ExportableDocument, com.biomatters.geneious.publicapi.documents.XMLSerializable.OldVersionCompatible)
  • com.biomatters.geneious.publicapi.implementations.SequenceExtractionUtilities
  • com.biomatters.geneious.publicapi.implementations.SequenceExtractionUtilities.ExtractionOptions
  • com.biomatters.geneious.publicapi.implementations.SequenceGapInformation
  • com.biomatters.geneious.publicapi.implementations.TextDocument (implements com.biomatters.geneious.publicapi.documents.PluginDocument, com.biomatters.geneious.publicapi.documents.XMLSerializable, com.biomatters.geneious.publicapi.documents.XMLSerializable.OldVersionCompatible)

Interface Hierarchy

• com.biomatters.geneious.publicapi.implementations.SequenceGapInformation.Provider

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • com.biomatters.geneious.publicapi.implementations.PairedReadManager.Orientation
    • com.biomatters.geneious.publicapi.implementations.TextDocument.Format