Uses of Interface
com.biomatters.geneious.publicapi.documents.sequence.SequenceDocumentWithEditableAnnotations
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Packages that use SequenceDocumentWithEditableAnnotations Package Description com.biomatters.geneious.publicapi.documents.sequence Provides interfaces specifying the types ofsequence
andalignment
documents in Geneious, together with concrete classes used by sequence documents such asSequenceAnnotation
andSequenceCharSequence
.com.biomatters.geneious.publicapi.implementations.sequence ProvidesSequenceDocument
implementations for nucelotide, amino acid, and nucleotide graph (chromatogram) sequences. -
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Uses of SequenceDocumentWithEditableAnnotations in com.biomatters.geneious.publicapi.documents.sequence
Subinterfaces of SequenceDocumentWithEditableAnnotations in com.biomatters.geneious.publicapi.documents.sequence Modifier and Type Interface Description interface
EditableNucleotideGraphSequenceDocument
A mutable nucleotide sequence with residue graph.interface
EditableSequenceDocument
An extensions of aSequenceDocument
that can be edited. -
Uses of SequenceDocumentWithEditableAnnotations in com.biomatters.geneious.publicapi.implementations.sequence
Classes in com.biomatters.geneious.publicapi.implementations.sequence that implement SequenceDocumentWithEditableAnnotations Modifier and Type Class Description class
CombinedAlignmentAndAminoAcidSequenceDocument
See documentation atCombinedAlignmentAndSequenceDocument
class
CombinedAlignmentAndNucleotideGraphSequenceDocument
See documentation atCombinedAlignmentAndSequenceDocument
class
CombinedAlignmentAndNucleotideSequenceDocument
See documentation atCombinedAlignmentAndSequenceDocument
class
CombinedAlignmentAndSequenceDocument
A wrapper to both an alignment and a stand-alone sequence that appears as a single EditableSequenceDocument.class
DefaultAminoAcidSequence
A plugin document holding one amino acid sequence.class
DefaultNucleotideGraphSequence
An implementation of an editable chromatogram.class
DefaultNucleotideSequence
A plugin document holding one nucleotide sequence.class
DefaultSequenceDocument
A default implementation of a sequence document.class
OligoSequenceDocument
A sequence document which represents an olgionucleotide such as a Primer or DNA probe.
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