DefaultSequenceListDocument |
DefaultSequenceListDocument.createNewDocumentByTransformingSequences(SequenceDocument.Alphabet alphabet,
SequenceDocument.Transformer transformer,
jebl.util.ProgressListener progressListener) |
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DefaultSequenceListDocument |
DefaultSequenceListDocument.createNewDocumentByTransformingSequences(SequenceDocument.Alphabet alphabet,
SequenceDocument.Transformer transformer,
jebl.util.ProgressListener progressListener,
boolean allowMultipleThreads) |
Creates a new DefaultSequenceListDocument (whose sequences will be a SequenceListOnDisk ) by applying a transformation to each of the sequences in this list.
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static DefaultSequenceListDocument |
DefaultSequenceListDocument.createNewDocumentByTransformingSequences(SequenceListDocument sequenceListDocument,
SequenceDocument.Alphabet alphabet,
SequenceDocument.Transformer transformer,
jebl.util.ProgressListener progressListener,
boolean allowMultipleThreads) |
Creates a new DefaultSequenceListDocument (whose sequences will be a SequenceListOnDisk ) by applying a transformation to each of the sequences in sequenceListDocument.
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static DefaultSequenceListDocument |
DefaultSequenceListDocument.forAminoAcidSequences(java.util.List<AminoAcidSequenceDocument> aminoAcidSequences) |
Construct a new DefaultSequenceListDocument.
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static DefaultSequenceListDocument |
DefaultSequenceListDocument.forBothSequenceTypes(SequenceDocument... sequences) |
Construct a new DefaultSequenceListDocument.
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static DefaultSequenceListDocument |
DefaultSequenceListDocument.forBothSequenceTypes(java.util.List<? extends SequenceDocument> sequences,
jebl.util.ProgressListener progressListener) |
Construct a new DefaultSequenceListDocument.
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static DefaultSequenceListDocument |
DefaultSequenceListDocument.forBothSequenceTypes(java.util.List<NucleotideSequenceDocument> nucleotideSequences,
java.util.List<AminoAcidSequenceDocument> aminoAcidSequences) |
Construct a new DefaultSequenceListDocument.
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static DefaultSequenceListDocument |
DefaultSequenceListDocument.forBothSequenceTypes(java.util.List<NucleotideSequenceDocument> nucleotideSequences,
java.util.List<AminoAcidSequenceDocument> aminoAcidSequences,
jebl.util.ProgressListener progressListener) |
Construct a new DefaultSequenceListDocument.
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static DefaultSequenceListDocument |
DefaultSequenceListDocument.forNucleotideSequences(java.util.List<NucleotideSequenceDocument> nucleotideSequences) |
Construct a new DefaultSequenceListDocument.
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DefaultSequenceListDocument |
SequenceListOnDisk.Builder.toSequenceListDocument(jebl.util.ProgressListener progressListener) |
Creates a new SequenceListDocument from this builder.
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