Interface NucleotideSequenceDocument
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- All Superinterfaces:
PluginDocument
,SequenceDocument
,XMLSerializable
- All Known Subinterfaces:
ChromatogramDocument
,EditableNucleotideGraphSequenceDocument
,NucleotideGraphSequenceDocument
- All Known Implementing Classes:
CombinedAlignmentAndNucleotideGraphSequenceDocument
,CombinedAlignmentAndNucleotideSequenceDocument
,DefaultNucleotideGraphSequence
,DefaultNucleotideSequence
,OligoSequenceDocument
public interface NucleotideSequenceDocument extends SequenceDocument
An interface for a nucleotide sequence. An Nucleotide sequence should not implement the Sequence interface directly since geneious relies on this interface for determining the type of a sequence.
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Nested Class Summary
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Nested classes/interfaces inherited from interface com.biomatters.geneious.publicapi.documents.PluginDocument
PluginDocument.ReferencedDocumentsAlwaysLoaded, PluginDocument.ReferencedDocumentsNotLoaded, PluginDocument.SizeRequiredToLoadIntoMemoryProvider
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Nested classes/interfaces inherited from interface com.biomatters.geneious.publicapi.documents.sequence.SequenceDocument
SequenceDocument.Alphabet, SequenceDocument.Transformer
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Nested classes/interfaces inherited from interface com.biomatters.geneious.publicapi.documents.XMLSerializable
XMLSerializable.OldVersionCompatible, XMLSerializable.VersionSupportType
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Field Summary
Fields Modifier and Type Field Description static java.lang.String
NICE_NAME
A nice name to describe the documents represented by this class.-
Fields inherited from interface com.biomatters.geneious.publicapi.documents.PluginDocument
FILE_DATA_ATTRIBUTE_NAME, MAXIMUM_HTML_LENGTH, MODIFIED_DATE_FIELD
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Fields inherited from interface com.biomatters.geneious.publicapi.documents.sequence.SequenceDocument
GENOME_SEQUENCE_THRESHOLD
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Fields inherited from interface com.biomatters.geneious.publicapi.documents.XMLSerializable
ROOT_ELEMENT_NAME
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Method Summary
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Methods inherited from interface com.biomatters.geneious.publicapi.documents.PluginDocument
getCreationDate, getDescription, getDisplayableFields, getFieldValue, getName, getURN, toHTML
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Methods inherited from interface com.biomatters.geneious.publicapi.documents.sequence.SequenceDocument
getCharSequence, getSequenceAnnotations, getSequenceLength, getSequenceString, isCircular
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Methods inherited from interface com.biomatters.geneious.publicapi.documents.XMLSerializable
fromXML, toXML
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Field Detail
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NICE_NAME
static final java.lang.String NICE_NAME
A nice name to describe the documents represented by this class.- See Also:
- Constant Field Values
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