Uses of Package
com.biomatters.geneious.publicapi.databaseservice
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Packages that use com.biomatters.geneious.publicapi.databaseservice Package Description com.biomatters.geneious.publicapi.databaseservice Provides the interface and associated classes for defining a database service which is a service that appears on the left-hand side of the main Geneious window and provides the user with access to a database, for example NCBI or the local database for storing the user's documents.com.biomatters.geneious.publicapi.documents Provides interfaces and classes for defining documents in Geneious and related interfaces and classes for dealing with XMLSerialization.com.biomatters.geneious.publicapi.plugin Provides theGeneiousPlugin
interface and plugin related interfaces. -
Classes in com.biomatters.geneious.publicapi.databaseservice used by com.biomatters.geneious.publicapi.databaseservice Class Description BasicSearchQuery A simple, text only search query.CompoundSearchQuery.Operator Ways to connect the terms of a compound query.DatabaseService A Geneious service providing documents in response to a search query.DatabaseService.SequenceSearchQueryType The type of query for a sequence searchDatabaseServiceException Most database service methods may throw this exception.DatabaseServiceListener Code using aDatabaseService
can get notified of special events by registering this listener viaaddDatabaseServiceListener
.ExtendedSearchOption Base interface for extended search options.FolderView Stores information about documents in a folder.Query An interface that produces a common ancestor for various queries.QueryField Basic block for building advanced search queries.RetrieveCallback A callback that asynchronously reports back the documents resulting from aDatabaseService
search
.WritableDatabaseService Provides a DatabaseService that supports writing documents to it as well as providing a hierarchical folder representation of the database.WritableDatabaseService.DocumentsToAdd Holds information required for adding one or more documents to a database, potentially to different sub-folders.WritableDatabaseService.DocumentToAdd Holds information required for adding a single document to a database viaWritableDatabaseService.addDocumentCopies(DocumentsToAdd, ProgressListener)
and for databases implementing this viaWritableDatabaseService.addDocumentsImplementation(List, ProgressListener)
.WritableDatabaseService.SearchResultPropertiesAdjuster -
Classes in com.biomatters.geneious.publicapi.databaseservice used by com.biomatters.geneious.publicapi.documents Class Description DatabaseService A Geneious service providing documents in response to a search query.DatabaseServiceException Most database service methods may throw this exception.WritableDatabaseService Provides a DatabaseService that supports writing documents to it as well as providing a hierarchical folder representation of the database. -
Classes in com.biomatters.geneious.publicapi.databaseservice used by com.biomatters.geneious.publicapi.plugin Class Description DatabaseService A Geneious service providing documents in response to a search query.DatabaseServiceException Most database service methods may throw this exception.WritableDatabaseService Provides a DatabaseService that supports writing documents to it as well as providing a hierarchical folder representation of the database.